PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.011G150200.3
Common NameB456_011G150200
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 454aa    MW: 49310.3 Da    PI: 8.0044
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.011G150200.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.31.3e-08337384455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.011G150200.3 337 SHSLAERVRREKISERMKFLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 384
                         8*************************9....677*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.63E-11331388No hitNo description
SuperFamilySSF474595.5E-17331401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.523333383IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.1E-17333404IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.0E-6337384IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-9339389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 454 aa     Download sequence    Send to blast
MEKDQVFMGE GLNRAAAVQA GWNSCSFGME METDELNCVG SCFLNPKWHN SMDQSDPFES  60
ALSSMVCSPA ASNAGSTNFP ASGDNTMMTD LIGKLGNICN TGDISPQSLI KPPNNNNNCS  120
SNTSCYTSPL DSPPKLNLSM MGGNQILKHP SLVPVSADPG FAERAARFSC FNGLNPQVGV  180
TEAEFVQLTR VSTNQSIMVT GSQVHVPDSN KNTLQDGNSC SDKRNSRLSR CSSPENGDSK  240
DESSISEQIP GVGSSIKAQN DANARKRKSM PRGKAKETPS PAAAEAKIAE ENNKSTAKRS  300
KQQNDSAKAE NKENPKPPEP PKDYIHVRAR RGQATDSHSL AERVRREKIS ERMKFLQDLV  360
PGCNKVTGKA LMLDEIINYV QSLQRQVEFL SMKLATVNPR MNANTEALLS KDVNVSVSWI  420
FAAFSLSNGF FCAGIWFKVP TPARASYEQW HIQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012456950.10.0PREDICTED: transcription factor bHLH62-like isoform X1
TrEMBLA0A0D2UUE10.0A0A0D2UUE1_G
STRINGPOPTR_0002s23650.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48560.15e-56bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]